Bootstrapping Phylogenetic Trees - MathWorks
This example shows how to generate bootstrap replicates of DNA sequences. The data generated by bootstrapping is used to estimate the confidence of the branches in a phylogenetic tree. …
Bootstrapping Phylogenetic Trees: Theory and Methods Susan Holmes Abstract. This is a survey of the use of the bootstrap in the area of systematic and evolutionary biology. I present the …
Bootstrapping Phylogenetic Trees: Theory and Methods
May 1, 2003 · I present the current usage by biologists of the bootstrap as a tool both for making inferences and for evaluating robustness, and propose a framework for thinking about these …
Phylogeny estimation: traditional and Bayesian approaches
Apr 1, 2003 · Bootstrapping provides a robust (though potentially time-consuming) way to assess confidence in phylogenetic estimates. Bayesian techniques rely on the specification of a prior...
Renewing Felsenstein’s phylogenetic bootstrap in the era of ... - Nature
Apr 18, 2018 · Here we propose a new version of the phylogenetic bootstrap in which the presence of inferred branches in replications is measured using a gradual ‘transfer’ distance …
Bootstrapping Phylogenetic Trees: Theory and Methods Susan Holmes Abstract. This is a survey of the use of the bootstrap in the area of systematic and evolutionary biology. I present the …
Fast and accurate bootstrap confidence limits on genome-scale ... - Nature
Sep 22, 2021 · Felsenstein’s bootstrap approach is widely used to assess confidence in species relationships inferred from multiple sequence alignments. It resamples sites randomly with …
Majority-rule consensus trees can be used to construct a phylogeny showing all of the inferred monophyletic groups that occurred in a majority of the bootstrap samples. If a group shows up …
Bootstrapping Phylogenetic Trees: Theory and Methods - Project Euclid
I present the current usage by biologists of the bootstrap as a tool both for making inferences and for evaluating robustness, and propose a framework for thinking about these problems in …
Bootstrapping Phylogenetic Trees: Theory and Methods
This dissertation proposes bootstopping criteria which are designed to provide on-the-fly guidance for determining when enough bootstrap replicates have been reconstructed, and presents …