Swiss PDB Viewer - Home
Description. Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time.
Swiss PDB Viewer - Tutorial - Main - UNIL
The best way to learn is by practising. Therefore, I have provided some practical examples that you should read, not only because I have spent so much time making them, but because they illustrate many operations that you will probably have to use during your research.
Swiss PDB Viewer User Guide - Main - UNIL
General Informations. Swiss-PdbViewer can load and display several molecules simultaneously. Each molecule is loaded into its own layer.Each molecule is composed of groups (i.e. amino acids, nucleotides, substrates...). Each group is composed of atoms, whose coordinates are taken directly from a PDB file.. Workspace
Swiss PDB Viewer User Guide - File Operations - UNIL
Loading one molecule. To display a molecule, simply drag a Pdb file onto the Swiss-PdbViewer icon (or main window for PC), select "Open" item from the "File" menu, or select one of the recently opened proteins that appear at the bottom of the file menu.
Swiss PDB Viewer User Guide - Molecule(s) Display Area - UNIL
Besides, you can individually change the color of any group using the Control Panel or the Color Menu.. There is currently no direct printing feature. However, you can export the content of the display window as a 72 dpi bitmap picture that can be printed from your favorite graphic program.
Swiss PDB Viewer - Tutorial - Superimposition - UNIL
Step by Step. First of all, open the pdb file 1HBG (it is included in the tutorial package).; Hide all the sidechains by option-clicking (right mouse button for PC users) on the sidechain column of the control panel, and colour the whole molecule in white by option-clicking in one of the colour boxes of the control panel .
Swiss PDB Viewer User Guide - Download Manual - UNIL
Note. The Manual for version 4 is not ready. However, it is still possible to download the Manual of version 3.7 which could still be very useful, as many of the basic functionnalities are described.
Swiss PDB Viewer - References - UNIL
If you publish pictures or models from SwissPdb Viewer, please cite the following paper: Guex, N. and Peitsch, M.C. (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling.
Swiss PDB Viewer - Index - UNIL
Index. This index is provided with the sole purpose of pointing to a page where you can find more information about the subject.
Swiss PDB Viewer Tutorial - Building Tools - UNIL
Swiss-PdbViewer provides various tools to manipulate a protein. Build loop Given two amino-acids as anchor points, several loops will be constructed de novo, and you can then pick your favorite one very easily.